From: Slim Sassi <ssassi@CCIB.MGH.HARVARD.EDU>
Subject: [galaxy-user] NGS RNA-seq
To: galaxy-user@bx.psu.edu
Date: Monday, January 24, 2011, 7:47 AM

Hello,
I have followed the steps described by Jeremy in his exercise (http://main.g2.bx.psu.edu/u/jeremy/p/galaxy-rna-seq-analysis-exercise) to analyze RNA-seq data and all of the steps seemed to go ok except that at the end the gene IDs were missing, so for example the file CDS diff file had nothing in it. All the steps seemed to be executed correctly with proper mapping to various places in the mouse genome.
Please help

Thanks

Slim


Slim O. Sassi, PhD
Research Fellow
Center for Computational and Integrative Biology, Massachusetts General Hospital
Department of Genetics, Harvard Medical School
185 Cambridge Street
CCIB- CPZN 7-7228 Simches Research Center
Boston MA 02114
Phone: (617) 726-5971
Fax: (617) 643-3328
ssassi@ccib.mgh.harvard.edu




The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.


_______________________________________________
galaxy-user mailing list
galaxy-user@lists.bx.psu.edu
http://lists.bx.psu.edu/listinfo/galaxy-user