===> Please use "Reply All" when responding to this email! <=== Hello, Chromosome names will need to be modified once the file is imported, as explained in #5 of the FAQ: http://usegalaxy.org/u/jeremy/p/transcriptome-analysis-faq Hopefully this helps, Best, Jen Galaxy team On 9/15/11 8:22 PM, shamsher jagat wrote:
I have related question If I have to use Ensembl mouse GTF file (Mus_musculus.NCBIM37.64) Do I have to download and reformat it or Galaxy can take it from the source directly?
Thanks
On Sun, Aug 28, 2011 at 8:50 AM, Peng, Tao <tpeng@fhcrc.org <mailto:tpeng@fhcrc.org>> wrote:
===> Please use "Reply All" when responding to this email! <===
__
Hi how can I specify a GTF gene annotation file when running tophat to guide the alignment to human genome? What is the best way to visualize the tophat results in the context of annotated human genome, i.e. RefSeq?
Thanks,
tao
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