Kristis,

This data is available further downstream in an RNA-seq analysis pipeline, specifically, as output from the Cuffdiff tool. Take a look at the page for more details:

https://main.g2.bx.psu.edu/rna-seq

Best,
J.

On Nov 9, 2012, at 3:42 AM, Vevis, Christis wrote:

Hi,
 
I am performing online tophat on 5  different samples which I want to compare for gene expression. Is there any simple way, after the end of tophat for all of them, with which I can have an excel table with the 5 samples and their hits?
 
Something similar to this
Vevis1
Vevis2
Vevis3
Vevis4
Vevis5
uc010kuo.1
128.8503
136.60553
146.7073
91.23218
120.325
AK311687
TRA2A
Homo sapiens transformer 2 alpha homolog (Drosophila) (TRA2A), mRNA.
Regards
 
Kristis Vevis, PhD Student
Cell Biology
UCL Institute of Ophthalmology
11-43 Bath Street
London
EC1V 9EL, UK
020 7608 4067
 
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