31 Oct
2008
31 Oct
'08
9 a.m.
Nate Coraor wrote:
Henrikki Almusa wrote:
Now I still have one more question :). Is there any way to add enviromental variables to the command that the galaxy executes in the SGE cluster? I managed to do it by editing the script template in
lib/galaxy/jobs/runners/sge.py
However that would be a bit of a hack.
The way we do it is to add them to the user's shell startup files.
I tried adding to .bashrc (/bin/sh points to /bin/bash), but it doesn't seem to be loaded when the script is run. -- Henrikki Almusa