I have related question If I have to use Ensembl mouse GTF file (Mus_musculus.NCBIM37.64) Do I have to download and reformat it or Galaxy can take it from the source directly?


On Sun, Aug 28, 2011 at 8:50 AM, Peng, Tao <tpeng@fhcrc.org> wrote:
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Hi how can I specify a GTF gene annotation file when running tophat to guide the alignment to human genome? What is the best way to visualize the tophat results in the context of annotated human genome, i.e. RefSeq?



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