Hello Jean, There is no method for transferring existing genomes/indexes to user histories. This tool set is brand-new on the public server and is released as beta. In the near-term, more genomes will be indexed and added, but for now, using a Custom reference genomes is the available option. http://wiki.g2.bx.psu.edu/Support#Custom_reference_genome mm9 comes from UCSC and is available from their downloads server at: http://hgdownload.cse.ucsc.edu/goldenPath/mm9/ If you need help navigating, UCSC's help is at: http://genome.ucsc.edu/contacts.html Best, Jen Galaxy team On 4/20/12 2:47 AM, Jean JAUBERT wrote:
Hi,
The NGS: GATK Tools on main are so far only for human genome. Do you have an idea when other genomes (such as my favorite, i.e mice and mm9) would be accessible ? Otherwise, is there a way to easily transfer "mm9 genome that is system-installed on main" directly in a "Custom build genome" that could be used in such a case ? Or is this a bad idea ? Thanks for your help, Best.
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