Hi Greg, Upload your files to a Galaxy data library using a combination of "Upload files from filesystem paths" without copying data into Galaxy's default data store. See the following wiki for all the details: http://wiki.g2.bx.psu.edu/Admin/Data%20Libraries/Uploading%20Library%20Files For all of the details about data libraries, see: http://wiki.g2.bx.psu.edu/Admin/Data%20Libraries Greg Von Kuster On Apr 23, 2012, at 11:26 AM, Gregory Miles wrote:
We have large files that cannot be uploaded using the "file upload" command and instead would need to be uploaded using a URL. Unfortunately, we are using a "local" install on a non-local machine, so setting up an FTP server on this machine is a security issue. The files are located on this computer already anyhow, and Galaxy would simply be copying from one folder to another in order to perform the "get data" step. Is there a simple way to have a "pointer" of some sort such that galaxy knows where this file is and:
1) Would not have to copy it and could simply refer to the file location. 2) Could perform data analysis steps on this file and push the output to the usual location (not the location of the data files).
Any help would be greatly appreciated. Thanks.
Dr. Gregory Miles Bioinformatics Specialist Cancer Institute of New Jersey @ UMDNJ Office: (732) 235 8817
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