I've uploaded a compressed (gzip) fastq file into galaxy. The file is recognized as fastq. When I try to run the FASTQ Summary Statistics program on the uploaded file, I don't see the file listed in the drop-down box.
This is because all Galaxy tools that use fastq as an input data type require fastqsanger format. Use the FASTQ groomer to convert your fastq file into fastqsanger format, and the resulting dataset will be available for summary statistics. More information on basic fastq manipulations, including grooming, can be found in this screencast:
I then tried to change the type of the file from fastq to fastqillumina and I get the following error:
⇝ TypeError: ldda_edit_info() takes exactly 6 non-keyword arguments (5 given)