Hi Oren,<br><br>I had no idea so I went to the Galaxy mailing list archive @ Nabble (<a href="http://gmod.827538.n3.nabble.com/Galaxy-f829901.html">http://gmod.827538.n3.nabble.com/Galaxy-f829901.html</a>) and searched for Condor (<a href="http://gmod.827538.n3.nabble.com/template/NamlServlet.jtp?macro=search_page&amp;node=829901&amp;query=condor">http://gmod.827538.n3.nabble.com/template/NamlServlet.jtp?macro=search_page&amp;node=829901&amp;query=condor</a>).  It appears that Ravi Madduri @ Argonne has done some work with this.  <br>
<br>I was also at a meeting in March with someone from Wisconsin (where I think Condor is currently developed) and they indicated their might be interest in helping Galaxy work with Condor.  I/you can pursue this option as well.<br>
<br>Dave C.<br><br><br><br><br><br><div class="gmail_quote">On Wed, Sep 21, 2011 at 9:38 AM, Oren Livne <span dir="ltr">&lt;<a href="mailto:livne@uchicago.edu">livne@uchicago.edu</a>&gt;</span> wrote:<br><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">

  
    
  
  <div bgcolor="#FFFFFF" text="#000000">
    Dear Dave,<br>
    <br>
    This was very useful. Thank you so much. Specifically, I am trying
    to integrate Galaxy with Condor, which supports DRMAA. Is there an
    existing Condor job runner implementation, or any useful code for
    submitting Galaxy jobs to Condor?<br>
    <br>
    Thanks!<div class="im"><br>
    Oren<br>
    <br>
    On 9/20/2011 12:21 PM, Dave Clements wrote:
    </div><div><div></div><div class="h5"><blockquote type="cite">Hi Oren,<br>
      <br>
      This book chapter <a href="http://userwww.service.emory.edu/%7Eeafgan/content/Galaxy_eScienceGateway.pdf" target="_blank">http://userwww.service.emory.edu/~eafgan/content/Galaxy_eScienceGateway.pdf</a>,
      includes a high-level overview of Galaxy.  (Note: that chapter
      will be copied to the wiki soon.)<br>
      <br>
      There is some API documentation. <br>
      ~/scripts/api/README, <br>
      ~/scripts/api/workflow_
      <div>execute.py and <br>
        ~/scripts/api/example_watch_folder.py  in the distribution<br>
        <a href="http://wiki.g2.bx.psu.edu/News%20Briefs/2010_07_16#Initial_implementation_of_the_Galaxy_Web_API" target="_blank">http://wiki.g2.bx.psu.edu/News%20Briefs/2010_07_16#Initial_implementation_of_the_Galaxy_Web_API</a><br>

        <a href="http://wiki.g2.bx.psu.edu/News%20Briefs/2011_08_30#API" target="_blank">http://wiki.g2.bx.psu.edu/News%20Briefs/2011_08_30#API</a><br>
        <a href="http://wiki.g2.bx.psu.edu/Events/GCC2011" target="_blank">http://wiki.g2.bx.psu.edu/Events/GCC2011</a> (<i>Galaxy
          Deployment and API</i> presentation)<br>
        <a href="http://wiki.g2.bx.psu.edu/Admin/Sample%20Tracking/Next%20Gen" target="_blank">http://wiki.g2.bx.psu.edu/Admin/Sample%20Tracking/Next%20Gen</a><br>
        <a href="http://wiki.g2.bx.psu.edu/Events/GCC2011/Workflows%20and%20API" target="_blank">http://wiki.g2.bx.psu.edu/Events/GCC2011/Workflows%20and%20API</a><br>
        <br>
        Sometime in the next week I&#39;ll compile all this into a single
        wiki page.<br>
        <br>
        As far as I know there is no &quot;How to write a runner for Galaxy&quot;
        document.  The closest we have is<br>
        <a href="http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Cluster" target="_blank">http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Cluster</a>
        and<br>
        <a href="http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Web%20Application%20Scaling" target="_blank">http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Web%20Application%20Scaling</a><br>
        <br>
        Hope this helps,<br>
        <br>
        Dave C.</div>
      <br>
      <br>
      <div class="gmail_quote">On Mon, Sep 19, 2011 at 9:51 AM, Oren
        Livne <span dir="ltr">&lt;<a href="mailto:livne@uchicago.edu" target="_blank">livne@uchicago.edu</a>&gt;</span>
        wrote:<br>
        <blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
          Dear All,<br>
          <br>
          I am a software developer, new to Galaxy. Is there a detailed
          document about the Galaxy code architecture, API, what runners
          are, and how to write a runner?<br>
          <br>
          I am especially interested in integrating Galaxy with an
          external scheduler software (I am aware of Galaxy&#39;s scheduling
          capabilities). I&#39;d like to intercept Galaxy workflows and send
          their object model to my scheduler. I could not find this
          information on the Galaxy Wiki.<br>
          <br>
          Thank you so much in advance,<br>
          Oren Livne<br>
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      </div>
      <br>
      <br clear="all">
      <br>
      -- <br>
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    </blockquote>
    <br>
  </div></div></div>

</blockquote></div><br><br clear="all"><br>-- <br><a href="http://galaxyproject.org/" target="_blank">http://galaxyproject.org/</a><br><a href="http://getgalaxy.org/" target="_blank">http://getgalaxy.org/</a><br><a href="http://usegalaxy.org/" target="_blank">http://usegalaxy.org/</a><br>
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