Re: [galaxy-user] Installing Galaxy on a Cluster - What to do about Python

On Wed, Nov 7, 2012 at 9:52 AM, Oleksandr Moskalenko <om@hpc.ufl.edu> wrote:

On Nov 7, 2012, at 9:47 AM, greg <margeemail@gmail.com> wrote:

...

Thanks, but I'm confused. How will the cluster jobs galaxy submits know to use the virtual env?

Or since all jobs are submitted as the galaxy user it will have the correct one?

-Greg

Greg,

You can configure the environment for batch jobs in the file specified in the "environment_setup_file =" configuration directive.

You can do this or at least for SGE you can also use '-V' while configuring your job runner URL. drmaa://-V -q all.q/ Hope it helps, Carlos