Hi Anto,

Thank you very much for your reply! I tried Galaxy/NBIC. However, I had problem with uploading my files. I used FTP, because the file I had was larger than 2G, but I couldn’t connect to the NBIC FTP. Do you have some idea how to solve the problem? Thanks!

Yan

发件人: Anto Praveen Rajkumar Rajamani [mailto:APR@hum-gen.au.dk]
发送时间: Thursday, August 22, 2013 3:14 PM
收件人: Yan He; galaxy-user@lists.bx.psu.edu
主题: RE: [galaxy-user] Counts of mapped reads for each gene?

Hi Yan,

You may use the HTseq count wrapper in the http://galaxy.nbic.nl/.

It does a good job and I could employ edgeR on that count matrix.

Good luck.

Best wishes,

Anto