Hi David, It sounds like you are using the public Galaxy server at http://usegalaxy.org (http://main.g2.bx.psu.edu)? A BLAST service is not available on the public instance. (Megablast is available, but for NGS query data versus a specific set of target native genomes). Bjoern is correct that you will need to obtain a Galaxy BLAST wrapper from the Tool Shed. http://wiki.g2.bx.psu.edu/Tool%20Shed Tools Shed entries can be searched for with: http://galaxy.psu.edu/search/getgalaxy These would be installed into a local or cloud version of Galaxy and set up using the following instructions: http://getgalaxy.org The galaxy-dev@bx.psu.edu mailing list is a good choice if you need help/advice with set up: http://wiki.g2.bx.psu.edu/Support#Mailing_Lists Prior Q/A can also be searched with: http://galaxy.psu.edu/search/mailinglists Best wishes for your project, Jen Galaxy team On 2/9/12 9:47 AM, David PANG wrote:
Hi, Everybody,
I uploaded two complete genome sequences and hope to BLAST homologs from both genome.
Does anybody know how to do BLAST search on galaxy?
Thanks
David
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
-- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/wiki/Support