Hi,

How do I run Tophat and RNA-Seq analysis using the GRCH37- embl 66 genome? I noticed there is no input for this genome version.

Can I construct a reference genome from the following embl format source sequences: ftp://ftp.ensembl.org/pub/release-66/embl/homo_sapiens/, and map it against my RNAseq data?

Regards,

Karthik

Karthik Srinivasan | Senior Application Engineer
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Oracle Health Sciences Global Business Unit
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