On Nov 16, 2012, at 12:24 PM, greg wrote:
Also what would I look for in the log file to know if it's issuing jobs?
I started a new upload, but I don't see anything from the galaxy user when I run qstat.
If you follow the log, you should see messages from galaxy.jobs, and specifically, galaxy.jobs.runners.drmaa. --nate
Thanks again.
Greg
On Fri, Nov 16, 2012 at 12:22 PM, greg <margeemail@gmail.com> wrote:
I guess I'm still confused about new_file_path.
The upload tool uses that directory to store files temporariliy until the upload completes? And then moves it? (Will it clean up anything placed in the new_file_path directory?)
Thanks,
Greg
On Fri, Nov 16, 2012 at 10:56 AM, Nate Coraor <nate@bx.psu.edu> wrote:
On Nov 16, 2012, at 10:41 AM, greg wrote:
On Fri, Nov 16, 2012 at 10:00 AM, Nate Coraor <nate@bx.psu.edu> wrote:
On Nov 16, 2012, at 9:14 AM, greg wrote:
Are you running the upload tool on a cluster?
--nate
Well I have Galaxy set up to send it's jobs to SGE/qsub but I haven't verified that it's doing that yet. I wanted to upload a file to test on first.
Here are the changes I made to universe_wsgi.ini after copying the sample:
#upload1 = local:///
I'm guessing that it's working, you can verify by having a look in your Galaxy server output/log file. new_file_path will need to be set to something that is accessible on the cluster.
--nate
-Greg