Nate,

Your solution did not work. If I use debug=False, on executing the 'get data' tool I get an Internal server error in the right panel. I thought using Firefox worked but it only removed the error from the log that I copied, the file still did not upload. 

At this point, what worked was gzipping the qual files and then uploading them. This made them about 2 GB in size and things went smoothly.

-Lin

On Tue, Apr 27, 2010 at 7:26 PM, Linda Barnum <lin.barnum@gmail.com> wrote:
Nate,

Thanks, I'll try that out and let you know. In the meanwhile I found
that if I use Firefox it seems to work without issues, I was initially
using Google Chrome as my browser.

Thanks,
Lin

On 4/27/10, Nate Coraor <nate@bx.psu.edu> wrote:
> Hi Lin,
>
> Please try the following:
>
> debug = False
> use_lint = False
> use_interactive = False
>
> And let us know if this fixes it for you.
>
> Thanks,
> --nate
>
> Linda Barnum wrote:
>> Nate,
>>
>> No, debug is set to true. Some lines from the universe_wsgi.ini file
>>
>> # Configuration for debugging middleware
>> debug = True
>> use_lint = False
>>
>> # Interactive debugging - NEVER enable this on a public site
>> use_interactive = True
>>
>> Lin
>>
>> On 4/26/10, Nate Coraor <nate@bx.psu.edu> wrote:
>>> Hi Linda,
>>>
>>> Do you have 'debug = False' in your configuration?
>>>
>>> Thanks,
>>> --nate
>>>
>>> Linda Barnum wrote:
>>>> Hello,
>>>>
>>>> I am resending this since it seemed to have gotten lost in the
>>>> moderation queue somewhere.
>>>>
>>>> I am using a local install of galaxy for processing Illumina data.
>>>> However, for large (about 3 GB) files, it gives an error and while it
>>>> appears as if the upload is progressing, nothing happens.
>>>>
>>>>   File
>>>> "/home/lin/public_html/galaxy-dist/eggs/WebOb-0.8.5-py2.6.egg/webob/__init__.py",
>>>>
>>>> line 818, in str_POST
>>>>     keep_blank_values=True)
>>>>   File "/usr/lib64/python2.6/cgi.py", line 508, in __init__
>>>>     self.read_multi(environ, keep_blank_values, strict_parsing)
>>>>   File "/usr/lib64/python2.6/cgi.py", line 635, in read_multi
>>>>     headers = rfc822.Message(self.fp)
>>>>   File "/usr/lib64/python2.6/rfc822.py", line 108, in __init__
>>>>     self.readheaders()
>>>>   File "/usr/lib64/python2.6/rfc822.py", line 155, in readheaders
>>>>     line = self.fp.readline()
>>>>   File "/usr/lib/python2.6/site-packages/paste/httpserver.py", line 476,
>>>> in readline
>>>>     data = self.file.readline(max_read)
>>>>   File "/usr/lib64/python2.6/socket.py", line 379, in readline
>>>>     bline = buf.readline(size)
>>>> OverflowError: signed integer is greater than maximum
>>>> ----------------------------------------
>>>> 127.0.0.1 - - [13/Apr/2010:12:14:00 +0600] "GET /history HTTP/1.1" 200 -
>>>> "http://localhost:8080/tool_runner/upload_async_message" "Mozilla/5.0
>>>> (X11; U; Linux x86_64; en-US) AppleWebKit/533.2 (KHTML, like Gecko)
>>>> Chrome/5.0.342.7 Safari/533.2"
>>>>
>>>> ==== End of error output===
>>>>
>>>> What could be going wrong?
>>>>
>>>> Thanks. Any help would be appreciated.
>>>> Lin
>>>>
>>>>
>>>> ------------------------------------------------------------------------
>>>>
>>>> _______________________________________________
>>>> galaxy-user mailing list
>>>> galaxy-user@lists.bx.psu.edu
>>>> http://lists.bx.psu.edu/listinfo/galaxy-user
>>>
>
>