Thank you for the prompt reply. Will look forward to it.<br><br>Best,<br>Surya<br><br><div class="gmail_quote">On Tue, Mar 29, 2011 at 10:56 AM, Jeremy Goecks <span dir="ltr">&lt;<a href="mailto:jeremy.goecks@emory.edu">jeremy.goecks@emory.edu</a>&gt;</span> wrote:<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;"><div style="word-wrap: break-word;"><div class="im"><div><br><blockquote type="cite">Hi,<br>
<br>Are there any tools like HMMER (2.3.2 or 3.0) available on Galaxy to run a HMM on a DNA or protein sequence? I was not able to find any. Thanks<br><br>-Surya<br></blockquote><br></div></div><div>Surya,</div><div><br></div>
<div>HMMer is not available on our public server, nor is there anything similar. However, there is a wrapper for hmmscan in the Galaxy Tool Shed: <a href="http://community.g2.bx.psu.edu/" target="_blank">http://community.g2.bx.psu.edu/</a> that you can use if download and install on a local Galaxy instance.</div>
<div><br></div><div>I expect we&#39;ll add HMM support in the future, but it&#39;s not a priority right now.</div><div><br></div><div>Best,</div><div>J.</div><font color="#888888"><div><br></div><div><br></div></font></div>
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