
Vincent Great question!!! And a follow up for me, is how to purge the conserved sequences. Presently the current data set I have from "Fetch" is likely to be 99% composed of incorrect taxon just because of conserved sequence. So, how do you select just unique sequences (ie those that do not have more then... say 5 hits above 99%). Any advice would be nice. Our bioinformatic person said there was a way to do it thru blast X. Scott Scott Tighe Advanced Genome Technology Lab Vermont Cancer Center at the University of Vermont 149 Beaumont Avenue Health Science Research Bd RM 305 Burlington Vermont USA 05405 lab 802-656-AGTC (2482) cell 802-999-6666 On 2/29/2012 8:32 PM, Montoya, Vincent wrote:
Hello I am a relatively new user on Galaxy and I had a question regarding "Fetching Taxonomic Information". It is great that I can retrieve all of the hits for each sequence, but I cannot seem to find an option to also provide how accurate of a match it is to the given taxon. For instance, a percentage match. I can access this information in the original file and programmatically retrieve it but, it would be nice if it came in one package so that I can avoide those false hits that have a low percentage match. Can you please provide me with instructions on how to best to retrieve this information (hopefully in a single file)? Thank you Vincent ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
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