Hi Peter, See an example below:
$ wget http://main.g2.bx.psu.edu/datasets/59a2a6ec00c47fc4/display?to_ext=fasta --2010-05-31 09:45:24-- http://main.g2.bx.psu.edu/datasets/59a2a6ec00c47fc4/display?to_ext=fasta Resolving main.g2.bx.psu.edu... 128.118.201.93 Connecting to main.g2.bx.psu.edu|128.118.201.93|:80... connected. HTTP request sent, awaiting response... 200 OK Length: 1177056689 (1.1G) [text/plain] Saving to: `display?to_ext=fasta' 0% [ ] 224,112 243K/s The download link was copied from the "save" icon.
$ wget http://main.g2.bx.psu.edu/datasets/c3a8db0a339f7a43/display?to_ext=fastqsang... --2010-05-31 09:49:10-- http://main.g2.bx.psu.edu/datasets/c3a8db0a339f7a43/display?to_ext=fastqsang... Resolving main.g2.bx.psu.edu... 128.118.201.93 Connecting to main.g2.bx.psu.edu|128.118.201.93|:80... connected. HTTP request sent, awaiting response... 416 Request Range Not Satisfiable
The file is already fully retrieved; nothing to do. The "request range not satisfiable" makes me think that your download
When I try with your link, I get: link is not valid for some reason. Florent On 30/05/10 23:43, pis@duke.edu wrote:
Dear Florent Angly,
Thank you very much for your response. I have actually tried to do that but it still does not work. When I choose "copy link location" in firefox (in my version no save link location appears" I get an URL with a strange data file name such as http://main.g2.bx.psu.edu/datasets/c3a8db0a339f7a43/display?to_ext=fastqsang....
This will not work with wget ("wget: No match"). I does not work either when I replace the data file name with the name of the file that apper when I want to download the file using the disl ikon. I would be happy for further advice on that since it has apparently worked for you.
Thank you very much for your help Peter
Zitat von Florent Angly <florent.angly@gmail.com>:
Hi Peter, It's pretty easy. In the Galaxy interface, use the "save" icon represented as a floppy disk. Instead of clicking on the icon, get the URL for it (in Firefox: right click > save link location). Then simply copy this URL in your terminal for wget to use. Florent
On 30/05/10 07:12, pis@duke.edu wrote:
Dear Galaxy team,
I am doing some standard clipping and trimming using galaxy and would be happy to download the generated files using a unix terminal and wget. Is it a way to figure it out the exact link of the data file to wget it easily? I am talking about file sizes over 5 Gb that are really time consuming and error prone to download using a web browser.
Thank you very much for developing this excellent tool Peter
_______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user
_______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user