Hi Mike, Would you mind sharing your history with me (guru@psu.edu) so that I can take a look at what's going on? You can do this by selecting "Options -> Share or Publish -> Share with a user" and entering my email address. Thanks, Guru. On Thu, Mar 10, 2011 at 9:15 AM, Michael E. Steiper < michaelsteiper@gmail.com> wrote:
Hi,
Sorry, a correction (I had the lengths reversed):
Original .maf > maf to fasta > length is 5572544 Original .maf > CpG mask > maf to fasta > length is 2735329
Thanks,
Mike
On Thu, Mar 10, 2011 at 8:53 AM, Michael E. Steiper <michaelsteiper@gmail.com> wrote:
Hi All,
I have a general question about CpG masking. I have a .maf file, when I use the maf to fasta tool, it gives me an alignment of 2,735,329 bp. But if I CpG mask the .maf file (restricted definition) then I use the maf to fasta tool, I get a very different alignment length, 5,572,544 bp. It would be great to know what is the cause of these differences.
THANKS!
Mike
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