Hi,
Any idea when the server is going to be up again?
Boaz
Boaz Shaanan, Ph.D.
Dept. of Life Sciences
Ben-Gurion University of the Negev
Beer-Sheva 84105
Israel
E-mail: bshaanan@bgu.ac.il
Phone: 972-8-647-2220 Skype: boaz.shaanan
Fax: 972-8-647-2992 or 972-8-646-1710
________________________________________
From: galaxy-user-bounces@lists.bx.psu.edu [galaxy-user-bounces@lists.bx.psu.edu] on behalf of Joachim Jacob | VIB | [joachim.jacob@vib.be]
Sent: Friday, September 06, 2013 10:32 AM
To: kanwarjag@gmail.com
Cc: galaxy-user@bx.psu.edu
Subject: Re: [galaxy-user] Bam QC and coverage
Hi Shamsher,
Another alternative is to use bamqc from the qualimap suite. The wrapper you can find at:
http://toolshed.g2.bx.psu.edu/view/joachim-jacob/qualimap_suite
You need to install this tool in a local Galaxy, with the qualimap suite installed and perl (see README).
Cheers,
Joachim
> On 09/04/2013 09:59 PM, shamsher jagat wrote:
> I am looking for a tool to perform QC of Bam file especially following
> functions:
> 1. BAsic information and stat.
> 2. Coverage across reference features- gene/ transcripts.
> Is it possible to do it in Galaxy?
> Thanks
--
Joachim Jacob
Contact details: http://www.bits.vib.be/index.php/about/80-team
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The Galaxy User list should be used for the discussion of
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