Hi Dongdong, The version of TopHat is 1.2.0 and Cufflinks is 1.0.1. The full list of all Galaxy dependencies can be found on the wiki at: http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Dependencies All the best, Graham Dr. Graham Etherington Bioinformatics Support Officer, The Sainsbury Laboratory, Norwich Research Park, Norwich NR4 7UH. UK Tel: +44 (0)1603 450601 From: dongdong zhaoweiming <zhaoweiming1983@yahoo.com.cn<mailto:zhaoweiming1983@yahoo.com.cn>> Date: Mon, 10 Oct 2011 17:57:51 +0100 To: "galaxy-user@lists.bx.psu.edu<mailto:galaxy-user@lists.bx.psu.edu>" <galaxy-user@lists.bx.psu.edu<mailto:galaxy-user@lists.bx.psu.edu>> Subject: [galaxy-user] version tophat and cufflinks Hi, May I ask what is the version of TopHat and cufflinks in the galaxy? Thanks a lot! weimin zhao