Complete News Brief
 

• NGS: Picard (beta) have moved from the Galaxy distribution to the Galaxy Main Tool Shed.

• The Galaxy Project is now using Sphinx Python to document the galaxy-central and galaxy-dist code base.

• The Intergalactic Utilities Commission will soon begin reviewing repositories in the Galaxy Main Tool Shed (better repos, better tools)

• Tool Shed "best practice" advice: a single tool or a suite of tools per repository?

• Tophat, Tophat2, and Cuffdiff updated to accept gene annotations in GFF3 format.

• Multiple enhancements to the API targeting user and history actions.

• Plus updates to CloudLaunch, new Security Fixes, and several usability enhancements for Datasets, Datatypes, Tools, and Tool Shed functions.

http://getgalaxy.org

http://bitbucket.org/galaxy/galaxy-dist

http://galaxy-dist.readthedocs.org


new:     $ hg clone http://www.bx.psu.edu/hg/galaxy galaxy-dist

upgrade: $ hg pull -u -r 5dcbbdfe1087

Thanks for using Galaxy!

Jennifer Jackson & the Galaxy Team