John, It is the number of reads that had this exact insertion, as you guessed. Let us know if you have further questions. Regards, Kelly On Mar 18, 2011, at 10:50 AM, John David Osborne wrote:
Hi, I was running an indel analysis on galaxy and I got a file as output that has rows that look like this:
fly2 9829 9830 I ATACTCCAA 79
Can anybody tell me what the last column (79) means? There is obviously an insertion at 9829 with those nucleotides, but I’m not sure what the 79 refers to even after reading the linked documentation. Is it the number of reads that had this? A quality score?
-John ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at: