Hi,

you can try to import your SRA directly as fastq files. Paste that URL
in the upload tool and modify the XXXX number.

http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=dload&run_list=SRRXXXXXX&format=fastq

Hope that helps,
Bjoern

Hello,  I would like to download some GEO files that complement my own

research with zebrafish embryos but apparently GEO is now only

providing .sra flles.

For a not very experienced unix person, does Galaxy have a tool for

this or is there a clear description somewhere else of how to do it

for someone who is not a bioinformaticist?

Thanks,

el linney

Duke University Medical Center

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--
Björn Grüning
Albert-Ludwigs-Universität Freiburg
Institute of Pharmaceutical Sciences
Pharmaceutical Bioinformatics
Hermann-Herder-Strasse 9
D-79104 Freiburg i. Br.

Tel.:  +49 761 203-4872
Fax.:  +49 761 203-97769
E-Mail: bjoern.gruening@pharmazie.uni-freiburg.de
Web: http://www.pharmaceutical-bioinformatics.org/

___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

 http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

 http://lists.bx.psu.edu/