I am working on the project to predict SNP from NGS data. I have found SNP using SAM tools and GATK (used reference hg19). I would like to know effect of SNP using SNPeff in GALAXY. I have given SNP in vcf format. I could not change the genome option as human, it is set is C.elegans by default

Please help me to solve this

On Tue, Mar 11, 2014 at 11:27 PM, Jennifer Jackson <jen@bx.psu.edu> wrote:

Hi Sathya,

The public Main Galaxy instance is down right now due to server issues. We anticipate this to be resolved by end of today.

Please watch the messages at http://usegalaxy.org for updates.

You can also follow Twitter at @galaxyproject, also posted on our wiki:
https://wiki.galaxyproject.org/Galaxy%20on%20Twitter

Thanks,

Jen
Galaxy team

On 3/11/14 2:45 AM, Sathya wrote:
Now the galaxy main server is not working. I would like to know how long it will take for galaxy to work again.
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With regards,
Sathya.B
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With regards,
Sathya.B