4 Mar
2012
4 Mar
'12
1:19 p.m.
On Sun, Mar 4, 2012 at 6:34 PM, Hemarajata, Peera <hemaraja@bcm.edu> wrote:
Dear all,
I’m been trying to get Galaxy to recognize this GFF from NCBI ( ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Lactobacillus_reuteri_JCM_1112_uid58875/NC_010609.gff) but it failed to recognize the format after I uploaded it.
That *could* be because the NCBI's GFF3 is still horrible broken, but they are working on it and the next release should have valid GFF which I am looking forward to. http://blastedbio.blogspot.com/2011/08/why-are-ncbi-gff3-files-still-broken.... However, if you get similar problems with a GFF3 file converted from GenBank using BioPerl, then I guess it is a Galaxy issue. Peter