[galaxy-user] Command line access to galaxy tools

hi! First, kudos to the galaxy team, it is really fantastic, and I'm really enjoying using it. Auestion: are any of the tools that are available in galaxy available for download (or extraction from the galaxy distribution), to be used from the command line? The Operate on Genomic Intervals: intersect and subtract tools are proving very useful, and I'd like to integrate them into some custom workflows we are running in our lab. Thank you very much! T Tim Yu, MD, PhD Assistant in Neurology, MGH Research Fellow, Neurogenetics, BIDMC and CHB