Hello Vikash,

Their are two Arabidopsis thaliana genomes indexed for use with some tools on the public Galaxy instance at http://usegalaxy.org - and full indexes will be published in the near term.

Arabidopsis_thaliana_TAIR10
Arabidopsis_thaliana_TAIR9

If you are using a local Galaxy, the indexes currently available can be created by you, or our version can be obtained from the rsync server. Instructions are here:
https://wiki.galaxyproject.org/Admin/Data%20Integration
https://wiki.galaxyproject.org/Admin/NGS%20Local%20Setup

If using the public Galaxy, you can use any genome with most tools as a custom reference genome right now, without waiting for us to index them. Instructions are here:
https://wiki.galaxyproject.org/Support#Custom_reference_genome

Hopefully this helps,

Jen
Galaxy team

On 1/26/14 11:03 PM, Vikash Yadav wrote:

Dear Sir/Maam

I am using Galaxy for analysis of NGS data. I want to map the NGS data, but the genome of my interest (Arabidopsis thaliana) is not listed. So what i can do to mapp my data using galaxy.

Waiting for your kind response

Thanks & Regards

Vikash

--

Vikash Kumar Yadav
Senior Research Fellow,
Plant Molecular Biology Lab,
National Botanical Research Institute,
Mobile- 090 261 190 92
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