I am trying to implement a SOLID pipeline for my solid data.

I really like the pipeline used in Galaxy, I was looking for conversion of SOLID to fastq, but it didn't say that how it is achieved in Galaxy.

I know for bwa you can use solid2fasta.pl but for bowtie i did not find any program or information.

I would really appreciate if you can help me with this, like how it is achieved and where i can download the program used by Galaxy.

Thanks

Shalabh Sharma

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