No, Galaxy does not work with the data in this format and no tools
have been donated to the tool shed by the data format authors to do
the conversion. You'll have to convert before loading into Galaxy,
but from there it can be prepped using tools in the group "FASTQ
Manipulation". There are also some mapping tools that use converted
SOLiD data as input specifically, these can be used on the Test
server https://test.g2.bx.psu.edu/ or a local or cloud Galaxy. http://getgalaxy.org http://usegalaxy.org/cloud
Best,
Jen
Galaxy team
On 6/13/13 3:53 PM, Wang, Daqing wrote:
Hello,
I wonder if Galaxy take SOLiD XSQ format
data as input for mapping. I know it takes csfasta/qual data.
Does anyone try this kind of analysis with
SOLiD XSQ format?
Any feedback and advice is appreciate it.
Thank you!
Daqing
Wang
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