Hello,
When importing MAF file, local galaxy install loads the data but shows an error: No data: global name 'bx' is not defined
When I tried to convert maf to fasta, I got the following error:
Traceback (most recent call last): File "/home/rochak/galaxy_latest/lib/galaxy/datatypes/converters/maf_to_fasta_converter.py", line 7, in import bx.align.maf File "/home/rochak/galaxy_latest/eggs/py2.5-linux-x86_64-ucs2/bx_python-0.5.0_dev_r459-py2.5-linux-x86_64.egg/bx/align/__init__.py", line 7, in File "/home/rochak/galaxy_latest/eggs/py2.5-linux-x86_64-ucs2/bx_python-0.5.0_dev_r459-py2.5-linux-x86_64.egg/bx/align/core.py", line 8, in File "/home/rochak/galaxy_latest/eggs/py2.5-linux-x86_64-ucs2/bx_python-0.5.0_dev_r459-py2.5-linux-x86_64.egg/bx/misc/__init__.py", line 5, in ImportError: No module named bz2
Does galaxy install bx_python in its initial setup?
/home/rochak/galaxy_latest/eggs/py2.5-linux-x86_64-ucs2/bx_python-0.5.0_dev_r459-py2.5-linux-x86_64.egg
is a file, not a directory.
How should I proceed forward to fix this?
Thanks, Rochak