Dear Nate -

 

 It seems I may have upset the cluster again: I have 3 Lastz jobs running and cannot upload any more data. I had been uploading fine; started 3 lastz mapping jobs (Fasta (1 sequence) vs Fasta (~3000 sequences) output as SNP, when I realised I made a mistake, cancelled these jobs, uploaded the correct files and then ran the 3 comparisons (similar files) again and now these jobs have been running >1hr and I cannot upload any more data.

 

Thanks in advance,

Andy

 

>>> Nate Coraor <nate@bx.psu.edu> 11/11/2011 17:16 >>>
On Nov 11, 2011, at 10:01 AM, Andrew South wrote:

> Thanks Nate, hope it's a quick fix. Best wishes, Andy

Hi Andy,

All backlogged NGS jobs should now be running, new ones will likely queue until free slots are available.  Please let us know if there's further trouble, and thanks for using Galaxy,

--nate

> 
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> >>> Nate Coraor <nate@bx.psu.edu> 11/11/2011 14:55 >>>
> On Nov 11, 2011, at 9:21 AM, Andrew South wrote:
>
> > Hello folks
> > 
> >  Anyone else having trouble with running Lastz to map?
> > 
> >  Jobs are being sent but not running.
> > 
> >  It stopped working for me two days ago after working perfectly, I've tried fiddling with the formats but no joy.
>
> Hi Andy,
>
> It looks like there's a problem with the cluster that runs our NGS jobs.  I'm currently looking into it.  Sorry for the inconvenience.
>
> --nate
>
> > 
> > Thanks,
> >
> > Andy
> > 
> > 
> > Dr A P South
> > Centre for Oncology and Molecular Medicine
> > University of Dundee
> > Ninewells Hospital & Medical School
> > Dundee
> > DD1 9SY
> > Tel 01382 496432
> > Fax 01382 633952
> > 
> > a.p.south@dundee.ac.uk
> > 
> > 
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