Correct to the first point. The space available to /mnt/galaxyTools is not configurable through the interface, though you could manually resize a volume if you did need more room. /mnt/galaxyData is the volume referred to in the dialogs you're seeing. -Dannon On Jan 10, 2012, at 2:53 PM, mailing list wrote:
Thanks. So if I just want to run my own program that uses SGE, it sounds like I shouldn't need a Galaxy instance. Is that right?
Does the storage space parameter control how much space is at /mnt/galaxyTools?
-Greg
On Tue, Jan 10, 2012 at 2:50 PM, Dannon Baker <dannonbaker@me.com> wrote:
Data Cluster only configures a persistent data volume and SGE. Galaxy Cluster includes a running Galaxy instance in addition to the persistent data volume and SGE configuration components from the Data Cluster option. The Galaxy Cluster option is what most users will probably want to choose.
How much space is absolutely dependent on your needs. Keep in mind that you can increase size later if necessary via the admin UI. The maximum volume size (per an amazon limit to EBS volume size) is currently 1TB.
-Dannon
On Jan 10, 2012, at 2:42 PM, mailing list wrote:
Hi guys,
When I first go to my cloudman page at <public dns>/cloud I get a dialog asking for some settings.
What does the Galaxy Cluster choice do? What does the Data Cluster choice do? Why can't I choose both? How much space should I allocate?
Thanks,
Greg
Text of dialog:
Galaxy Cluster: Galaxy application, available tools, reference datasets, SGE job manager, and a data volume. Specify the initial storage size (in Gigabytes): GBOK
Share-an-Instance Cluster: derive your cluster form someone else's cluster. Specify the provided cluster share-string (for example, cm-0011923649e9271f17c4f83ba6846db0/shared/2011-08-19--21-00): Cluster share-string
Data Cluster: a persistent data volume and SGE. Specify the initial storage size (in Gigabytes): GB
Test Cluster: SGE only. No persistent storage is created. ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
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