On 09/17/2010 05:28 AM, gireesh bogu wrote:
Dear Galaxy
I found a bug in extracting FATSA sequence tool in galaxy.
I extracted sequence of this location chr10 123229360 123229525 fgfr2 0 -
hg18_chr10_123229360_123229525_- GAATACTTGGACCTCAGCCAACCTCTCGAACAGTATTCACCTAGTTACCC TGACACAAGAAGTTCTTGTTCTTCAGGAGATGATTCTGTTTTTTCTCCAG ACCCCATGCCTTACGAACCATGCCTTCCTCAGTATCCACACATAAACGGC AGTGTTAAAACATGA
check the reverse complement of your sequence.....FGFR2 is on the reverse strand of chromosome 10 Hans
And I checked back in UCSC browser by pasting the same location. The sequences are completely different (hg18).
Could you please help me in this issue
Thanx Gireesh
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