Jeffrey, is this a publicly available genome build (e.g. In genbank?). It may be easier to provide the index. -- jt (composed on my phone) On Jun 8, 2010, at 12:19 PM, "Whyte, Jeffrey" <whytej@missouri.edu> wrote:
Hello,
On the Galaxy web interface, the option to map sequences with Bowtie for Illumina reads is listed under the Tools heading "NGS: Mapping".
At the top of the page, it states, "Will you select a reference genome from your history or use a built-in index?" The options are: "Use a built-in index" or "Use one from the history".
I have a genome index (swine) that is not available on the "built- in" list. Can I upload this index file to Galaxy under the Get Data page and then select it under "Use one from the history"?
The index file is 3 GB, so any advice is appreciated before I try to upload it.
Thanks in advance, Jeff ----- Jeffrey J. Whyte, PhD Department of Biomedical Sciences University of Missouri-Columbia
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