Hi,
I am trying to used Depth of Coverage to see the coverages is specific intervals.
The intervals were taken from UCSC (exons of 2 genes), loaded to Galaxy and the file type was changed to intervals.

I gave to Depth of Coverage two BAM files (resulted from BWA, selection of only raws with the Matching pattern: XT:A:U, and then SAM-to-BAM)
and the intervals file (in advanced GATK options).
The consensus genome is hg_g1k_v37.

I got the following error message:

An error occurred running this job: Picked up _JAVA_OPTIONS: -Djava.io.tmpdir=/space/g2main
##### ERROR ------------------------------------------------------------------------------------------
##### ERROR A USER ERROR has occurred (version 1.4-18-g80a4ce0):
##### ERROR The invalid argume


Is it a bug, or did I do anything wrong?

I will be grateful for any help.

Thanks!
   Lilach