Hello Curtis, There is some more feedback from our developers. In your own instance, this is the recommended change: Edit -> tools/stats/column_maker.py To add -> __ob__ and __cb__ to the mapped_str dict. Perhaps this will help if you still needed work-around (or others reading this thread). Best! Jen Galaxy team
On 7/20/11 1:13 PM, Robert Curtis Hendrickson wrote:
Folks,
I have a column c1 that has entries like “GXP_297346(PVALB/human)”.
I’m trying to use Text Manipulation > Compute to strip off the “(…)” portion, leaving only the accession (which can vary in length).
I have tried a variety of things that work in my python command line, but fail here, for example:
c1[1:c1.find("(")]
or
c1.split('(')[0]
This gets mangled:
An error occurred running this job: Expression "c1__ob__1:c1.find("(")__cb__" likely invalid.
Or
An error occurred running this job: Expression "c1.split("(")__ob__0__cb__" likely invalid.
Please help. This is driving me crazy.
Searching the list, I find only
http://gmod.827538.n3.nabble.com/inputs-sanitization-tt2664336.html#a2664911
“Inputs sanitization” which seems to indicate this is a global mapper that can only be disabled with dire security consequences.
And
http://gmod.827538.n3.nabble.com/substring-sequence-on-coordinate-in-columns...
“substring sequence on coordinate in columns” which doesn’t ever answer the question about how to get compute to work.
Thanks,
Curtis
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