Basic Statistics

Measure	Value
Filename	D1TB3ACXX_PR0055_02A15_H1_L007_R1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	50140881
Filtered Sequences	0
Sequence length	100
%GC	43

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per base GC content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

No overrepresented sequences

Kmer Content

Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CTCCA	9595585	3.510654	6.3710628	60-64
TTCTC	12116685	3.2885883	5.2676396	45-49
TCTCG	10716155	3.2443743	5.334085	80-84
CCAAG	11237210	3.0798802	5.2831144	55-59
CTTCT	11243660	3.0516405	5.6570544	95-96
GCCAA	11103775	3.0433087	5.249829	55-59
TCTTC	10632210	2.8856869	5.412275	90-94
TGCCA	9846895	2.8365011	5.120373	50-54
CTGCT	9346185	2.8296084	6.1322436	95-96
ACTCC	7230155	2.6452348	5.5269346	60-64
AAAAA	24620425	2.5958595	8.515192	95-96
CCGTC	5590090	2.3977835	6.3717356	85-89
GTGCC	7063720	2.3855677	5.072632	50-54
TCTGC	7538220	2.282237	5.32954	95-96

Files created by FastQC

D1TB3ACXX_PR0055_02A15_H1_L007_R1_fastqc.zip (171.6 KB)

duplication_levels.png (18.5 KB)

fastqc_data.txt (7.8 KB)

fastqc_report.html (8.0 KB)

kmer_profiles.png (65.5 KB)

per_base_gc_content.png (10.2 KB)

per_base_n_content.png (7.7 KB)

per_base_quality.png (9.8 KB)

per_base_sequence_content.png (16.5 KB)

per_sequence_gc_content.png (26.7 KB)

per_sequence_quality.png (19.4 KB)

rgFastQC3Jm48N.log (1.7 KB)

sequence_length_distribution.png (17.2 KB)

summary.txt (751 B)

FastQC documentation and full attribution is here

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FastQC was run by Galaxy using the rgenetics rgFastQC wrapper - see http://rgenetics.org for details and licensing