Hello All,

One more problem when running analysis on local galaxy install. I am trying to run fastqc on a fastq file I just imported. I have fastqc in ~/Programs/Galaxy/galaxy-dist/tool-data/shared/jars/FastQC

I am getting the following error

## odpath=None: No output found in None. Output for the run was:

/bin/sh: /root/Programs/Galaxy/galaxy-dist/tool-data/shared/jars/FastQC/fastqc: Permission denied

My guess is the output directory path is not set. If my guess is correct, the question is where do I set the path?

If my guess is wrong, any help interpreting the error greatly appreciated.

Aarti

Aarti Desai, Ph.D | Domain Specialist – Life Sciences

aarti_desai@persistent.co.in | Cell: +91-9673009492 | Tel: + 91-20-67036348

Persistent Systems Ltd. | Partners in Innovation | www.persistentsys.com

DISCLAIMER ========== This e-mail may contain privileged and confidential information which is the property of Persistent Systems Ltd. It is intended only for the use of the individual or entity to which it is addressed. If you are not the intended recipient, you are not authorized to read, retain, copy, print, distribute or use this message. If you have received this communication in error, please notify the sender and delete all copies of this message. Persistent Systems Ltd. does not accept any liability for virus infected mails.