--- On Fri, 2/25/11, Christopher Futtner <christopher.futtner@duke.edu> wrote:
From: Christopher Futtner <christopher.futtner@duke.edu> Subject: [galaxy-user] de-novo motif analysis To: galaxy-user@bx.psu.edu Date: Friday, February 25, 2011, 2:13 PM
Two questions - 1. When I call peaks with MACS on Galaxy I get different results than if I run MACS on my machine via command line. I'm using default parameters in both instances. 2. Are there any tools in galaxy for doing de-novo motif analysis of the peaks that I have called. If not can anyone suggest their favorite programs for doing so? I prefer a web interface but can fumble my way around using command line. Thanks, Chris
Christopher Futtner Duke University, Onaitis Lab 919-684-1183 106
Research Dr. MSRB II, rm. 2045 Bay 11 Durham, NC. 27710
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