Thanks for pointing this out, Brad. Both geecee and infoseq are in fact available on Galaxy under EMBOSS section.<div><br></div><div>Guru.<br><br><div class="gmail_quote">On Thu, Apr 14, 2011 at 12:13 PM, Brad Chapman <span dir="ltr">&lt;<a href="mailto:chapmanb@50mail.com">chapmanb@50mail.com</a>&gt;</span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">Peter and Guru;<br>
<br>
[Computing GC]<br>
<div class="im"><br>
&gt; I&#39;ll be working with simple sequence files (FASTA, or even FASTQ,<br>
&gt; SFF, etc) rather than BED files, but I&#39;ll keep that in mind.<br>
<br>
</div>Emboss has some utilities that do this. infoseq and geecee, and<br>
there are also programs for exploring CpG islands:<br>
<br>
<a href="http://emboss.sourceforge.net/apps/release/6.3/emboss/apps/nucleic_cpg_islands_group.html" target="_blank">http://emboss.sourceforge.net/apps/release/6.3/emboss/apps/nucleic_cpg_islands_group.html</a><br>
<font color="#888888"><br>
Brad<br>
</font></blockquote></div><br><br clear="all"><br>-- <br><font face="georgia, serif">Graduate student, Bioinformatics and Genomics</font><div><font face="georgia, serif">Makova lab/Galaxy team<br>505 Wartik lab<br>University Park PA 16802<br>
</font><a href="mailto:guru@psu.edu" target="_blank"><font face="georgia, serif">guru@psu.edu</font></a></div><br>
</div>