On Oct 2, 2012, at 3:26 PM, greg wrote:
On Tue, Oct 2, 2012 at 2:15 PM, Nate Coraor <nate@bx.psu.edu> wrote:
Hi Greg,
You should start at the top level documentation for production servers:
http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Production%20Server
This includes instructions on how to set up a virtualenv. You can make this the default by setting the $PATH in the Galaxy user's ~/.bash_profile to include the virtualenv's bin directory (at the beginning of $PATH).
This makes sense, but I ultimately want to run the jobs as the logged in user as per this page: http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Cluster#Submitting_Jobs_a...
It wouldn't be feasible to add the virtualenv to every users' path. I'm hoping there's some kind of other way?
Indeed there is. Have a look at the 'environment_setup_file' option in the config file. --nate
Thanks again,
Greg