Bjoern,

I interested in trying Bismark under Galaxy. Could you please point me where I can use it.

Thanks

Kanwar 

On Mon, Oct 8, 2012 at 8:08 AM, Björn Grüning <bjoern.gruening@pharmazie.uni-freiburg.de> wrote:
Hi David,

please do not hijack a different thread :)
If you are analysing Bisulfite data i would recommend to have a look at
http://www.bioinformatics.babraham.ac.uk/projects/ ... especially at
bismark.

We have written a wrapper for bismark, its still in testing phase but if
you like to try it out, you are welcome.

Cheers,
Bjoern

> Hi, there,
>
> I just got two genome-wide Bisulfite sequences from BGI and start to
> analyze the data.
>
> I am trying to use Galaxy; but I find there is no such platform
> available. Does anybody know where I can find this kind platform at
> Galaxy or other places.
>
> Thanks
>
> David
>

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