Hi Sachit,
you need to install such tools by yourself, unless you are using some
new tools from the toolshed. For example the ncbi-tools or BWA from the
toolshed are capable of installing all dependency automatically.
In the future the plan is to move all heavy tools to the toolshed with
automatic dependency and version handling, afaik.
Regards,
Bjoern
> ___________________________________________________________
> Hello. The tools like Tophat, Bowtie etc are pre-installed in Galaxy.
> Are those tools must be installed in order to work in Galaxy. For
> example: I am using Debian machine(Don't have tophat and bowtie
> installed). Will tophat and bowtie work in my local galaxy? Thanks
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