Laura, What kind of data you have and you would like to achieve? There are some Galaxy wrappers for plink (http://pngu.mgh.harvard.edu/~purcell/plink/) that may be useful for some kinds of analysis available in the rgenetics tools if you have linkage pedigree genotype and map files. On Tue, Apr 5, 2011 at 5:19 AM, Laura Iacolina <liacolina@uniss.it> wrote:
Dear all, I’m analysing SNPs data for the first time. I tried with the few software I found in litterature but they can only manage small datasets. I am currently trying with “genetics” package in R but the Geno function takes into account a marker at a time. Considering I have to analyse 200 samples with 50K markers is there any way to tell R to analyse each SNP one after the other?
Thank you very much for the help.
Laura
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