Hi Mathew, I have a mapper (bismark) and my own tools (+wrapper) and was able to do an entire analysis with it. The bismark wrapper is in the toolshed. The other tools can be found in my github repository. https://github.com/bgruening galaxytools and methtools Hope that helps, Bjoern
Do we have any tool which can be used for analyzing and QC check for bisulfite sequencing. I have FASTq files.
Thanks
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