Dear All, I'm very very much new to this ngs platform... and I'm currently getting started to work with ngs analysis as first assignment i had got raw sequence out of 454 and that too multiplexed. I had got couple of fna and qual files. only thing i know is that this is of bacterial genome. I like to know what type of analysis i can do with this and how.. i clearly know this is a wide question but do please help me out to get started and pls find time to give me an outline to start with -- ~~~~Auf Wiedersehen~~~~ Liebe
Hello Liebe, To help you get started, here are some links to our help, tutorials, and screencasts: http://galaxyproject.org/wiki/Learn http://usegalaxy.org/u/aun1/p/screencasts (see Metagenomic Analyses with Galaxy #1 & #2 for analysis with 454 data specifically) http://usegalaxy.org/u/aun1/p/galaxy101 http://usegalaxy.org/u/james/p/exercises Please let us know if we can help with a particular tool once you get started, Best, Jen Galaxy team On 10/22/11 3:24 AM, bassanio wrote:
Dear All,
I'm very very much new to this ngs platform... and I'm currently getting started to work with ngs analysis as first assignment i had got raw sequence out of 454 and that too multiplexed. I had got couple of fna and qual files. only thing i know is that this is of bacterial genome. I like to know what type of analysis i can do with this and how.. i clearly know this is a wide question but do please help me out to get started and pls find time to give me an outline to start with
-- ~~~~Auf Wiedersehen~~~~
Liebe
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
-- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/wiki/Support
Dear Jennifer, thanks for the mail, I was going through the screecasts *Processing and analysis of 454 data in metagenomic studies<http://screencast.g2.bx.psu.edu/galaxy/flash/mg_screencast_1.html> * and in the tutorial after loading the data in the second step its shows a link short read QC and maulpualation which i was unable to see in my galaxy(both in standalone and in the website). could you please help me on the same On Mon, Oct 24, 2011 at 7:02 AM, Jennifer Jackson <jen@bx.psu.edu> wrote:
Hello Liebe,
To help you get started, here are some links to our help, tutorials, and screencasts:
http://galaxyproject.org/wiki/**Learn<http://galaxyproject.org/wiki/Learn>
http://usegalaxy.org/u/aun1/p/**screencasts<http://usegalaxy.org/u/aun1/p/screencasts>(see Metagenomic Analyses with Galaxy #1 & #2 for analysis with 454 data specifically)
http://usegalaxy.org/u/aun1/p/**galaxy101<http://usegalaxy.org/u/aun1/p/galaxy101>
http://usegalaxy.org/u/james/**p/exercises<http://usegalaxy.org/u/james/p/exercises>
Please let us know if we can help with a particular tool once you get started,
Best,
Jen Galaxy team
On 10/22/11 3:24 AM, bassanio wrote:
Dear All,
I'm very very much new to this ngs platform... and I'm currently getting started to work with ngs analysis as first assignment i had got raw sequence out of 454 and that too multiplexed. I had got couple of fna and qual files. only thing i know is that this is of bacterial genome. I like to know what type of analysis i can do with this and how.. i clearly know this is a wide question but do please help me out to get started and pls find time to give me an outline to start with
-- ~~~~Auf Wiedersehen~~~~
Liebe
______________________________**_____________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/**listinfo/galaxy-dev<http://lists.bx.psu.edu/listinfo/galaxy-dev>
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
-- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/wiki/**Support<http://galaxyproject.org/wiki/Support>
-- ~~~~Auf Wiedersehen~~~~ Liebe
Dear Jennifer, Ignore my previous mail sorry i figured it out On Mon, Oct 24, 2011 at 3:31 PM, bassanio <yoursbassanio@gmail.com> wrote:
Dear Jennifer, thanks for the mail, I was going through the screecasts *Processing and analysis of 454 data in metagenomic studies<http://screencast.g2.bx.psu.edu/galaxy/flash/mg_screencast_1.html> * and in the tutorial after loading the data in the second step its shows a link short read QC and maulpualation which i was unable to see in my galaxy(both in standalone and in the website). could you please help me on the same
On Mon, Oct 24, 2011 at 7:02 AM, Jennifer Jackson <jen@bx.psu.edu> wrote:
Hello Liebe,
To help you get started, here are some links to our help, tutorials, and screencasts:
http://galaxyproject.org/wiki/**Learn<http://galaxyproject.org/wiki/Learn>
http://usegalaxy.org/u/aun1/p/**screencasts<http://usegalaxy.org/u/aun1/p/screencasts>(see Metagenomic Analyses with Galaxy #1 & #2 for analysis with 454 data specifically)
http://usegalaxy.org/u/aun1/p/**galaxy101<http://usegalaxy.org/u/aun1/p/galaxy101>
http://usegalaxy.org/u/james/**p/exercises<http://usegalaxy.org/u/james/p/exercises>
Please let us know if we can help with a particular tool once you get started,
Best,
Jen Galaxy team
On 10/22/11 3:24 AM, bassanio wrote:
Dear All,
I'm very very much new to this ngs platform... and I'm currently getting started to work with ngs analysis as first assignment i had got raw sequence out of 454 and that too multiplexed. I had got couple of fna and qual files. only thing i know is that this is of bacterial genome. I like to know what type of analysis i can do with this and how.. i clearly know this is a wide question but do please help me out to get started and pls find time to give me an outline to start with
-- ~~~~Auf Wiedersehen~~~~
Liebe
______________________________**_____________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/**listinfo/galaxy-dev<http://lists.bx.psu.edu/listinfo/galaxy-dev>
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
-- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/wiki/**Support<http://galaxyproject.org/wiki/Support>
-- ~~~~Auf Wiedersehen~~~~
Liebe
-- ~~~~Auf Wiedersehen~~~~ Liebe
participants (2)
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bassanio -
Jennifer Jackson