Using output as parameter in workflow
I have a user who is trying to use the output of summary statistics as input to the next step in a workflow. e.g. using "median + 2*stddev" as the threshold cutoff in the next step, which is "pileup-to-interval". Is that possible in galaxy workflow? The current workaround is to create two separate workflows and input the parameter manually, but that is less than ideal. Any suggestions would be appreciated. -- Lance Parsons - Software Developer/Data Analyst 134 Carl Icahn Laboratory Lewis-Sigler Institute for Integrative Genomics Princeton University
Hi Lance, While we don't have any plans to implement this feature right now, we appreciate the great suggestion and will keep it as a use case for future workflow tool development. Best! Jen Galaxy team On 9/1/10 11:43 AM, Lance Parsons wrote:
I have a user who is trying to use the output of summary statistics as input to the next step in a workflow. e.g. using "median + 2*stddev" as the threshold cutoff in the next step, which is "pileup-to-interval". Is that possible in galaxy workflow? The current workaround is to create two separate workflows and input the parameter manually, but that is less than ideal. Any suggestions would be appreciated.
-- Lance Parsons - Software Developer/Data Analyst 134 Carl Icahn Laboratory Lewis-Sigler Institute for Integrative Genomics Princeton University
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-- Jennifer Jackson http://usegalaxy.org
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