No reference genome listed for NGS: Mapping Map with TMAP for Ion Torrent
The "Select a reference genome" popup in the NGS mapping section is empty for TMAP for Ion Torrent tool (version 0.0.19) on the Galaxy Web Portal (I am using Galaxy Test, since I only have Ion Torrent data, and the TMAP tool is only on Galaxy Test). How can I populate it? Thank you very much in advance for any help you can provide! Cathy Catherine I. DUMUR, Ph.D. Associate Professor of the Department of Pathology Director of Molecular Morphology Genomics Associate Director of the Molecular Diagnostics Laboratory Co-Director of the Tissue and Data Acquisition and Analysis Core (TDAAC) Virginia Commonwealth University Phone: (804) 828-9564 Fax: (804) 827-4738 NOTE: The information contained in this message may be privileged and confidential and protected from disclosure. If the reader of this message is not the intended recipient, you are hereby notified that any dissemination, distribution or copying of this communication is strictly prohibited. If you have received this communication in error, please notify us immediately by replying to the message and deleting it from your computer. -------------------------------------- VCU Health System http://www.vcuhealth.org
Hi Cathy, The tool on Test is for development and not recommended (limited to no support). To use this tool, you will want to use a local or cloud version of Galaxy and obtain the tool from the Tool Shed. http://getgalaxy.org http://wiki.g2.bx.psu.edu/Tool%20Shed Hopefully this helps, Jen Galaxy team On 8/29/12 7:09 AM, Catherine Dumur wrote:
The "Select a reference genome" popup in the NGS mapping section is empty for TMAP for Ion Torrent tool (version 0.0.19) on the Galaxy Web Portal (I am using Galaxy Test, since I only have Ion Torrent data, and the TMAP tool is only on Galaxy Test). How can I populate it?
Thank you very much in advance for any help you can provide!
Cathy
Catherine I. DUMUR, Ph.D. Associate Professor of the Department of Pathology Director of Molecular Morphology Genomics Associate Director of the Molecular Diagnostics Laboratory Co-Director of the Tissue and Data Acquisition and Analysis Core (TDAAC) Virginia Commonwealth University Phone: (804) 828-9564 Fax: (804) 827-4738 NOTE: The information contained in this message may be privileged and confidential and protected from disclosure. If the reader of this message is not the intended recipient, you are hereby notified that any dissemination, distribution or copying of this communication is strictly prohibited. If you have received this communication in error, please notify us immediately by replying to the message and deleting it from your computer. -------------------------------------- VCU Health System http://www.vcuhealth.org <http://www.vcuhealth.org/>
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participants (2)
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Catherine Dumur -
Jennifer Jackson