Hello, I was wondering how Galaxy calculates the quality score for NGS data? Is there any documentation I could read on how this is calculated? Thanks! -Amy Boddy -- Amy Boddy Ph.D Candidate Center for Molecular Medicine & Genetics Wayne State University School of Medicine 540 E. Canfield, Detroit MI 48201 Website: http://homopan.wayne.edu/ Phone: 313.577.0086 email: aboddy@med.wayne.edu
On Thu, Feb 24, 2011 at 8:47 PM, Amy Boddy <aboddy@med.wayne.edu> wrote:
Hello, I was wondering how Galaxy calculates the quality score for NGS data? Is there any documentation I could read on how this is calculated? Thanks! -Amy Boddy
Which quality score are you talking about? Raw reads? Mappings? If it's FASTQ files you mean, may I suggest: http://dx.doi.org/10.1093/nar/gkp1137 and http://en.wikipedia.org/wiki/FASTQ_format Peter
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